IL_7QIZ_154

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_154 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.082

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

7QIZ|1|2|U|3325
7QIZ|1|2|G|3326
7QIZ|1|2|U|3327
7QIZ|1|2|A|3328
7QIZ|1|2|A|3329
7QIZ|1|2|G|3330
*
7QIZ|1|2|C|3360
7QIZ|1|2|U|3361
7QIZ|1|2|G|3362
7QIZ|1|2|A|3363
7QIZ|1|2|G|3364

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Y

TRASH domain-containing protein