IL_7QIZ_163
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- G(A2M)A*UUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_163 not in the Motif Atlas
- Geometric match to IL_4J50_003
- Geometric discrepancy: 0.1972
- The information below is about IL_4J50_003
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- Isolated cWH basepair
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
7QIZ|1|8|G|47
7QIZ|1|8|A2M|48
7QIZ|1|8|A|49
*
7QIZ|1|8|U|105
7QIZ|1|8|U|106
7QIZ|1|8|U|107
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- Ribosomal_L23eN domain-containing protein
- Chain l
- Ribosomal protein L37
- Chain n
- 60S ribosomal protein eL39
Coloring options: