IL_7QIZ_168

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGU*A(PSU)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_168 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1353

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QIZ|1|S2|A|22
7QIZ|1|S2|G|23
7QIZ|1|S2|U|24
*
7QIZ|1|S2|A|604
7QIZ|1|S2|PSU|605
7QIZ|1|S2|U|606

Current chains

Chain S2

18S

Nearby chains

Chain CA

40S body ribosomal protein uS12

Chain GA

40S body ribosomal protein uS4