IL_7QIZ_169

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCAU*A(UY1)A

Length

7 nucleotides

Bulged bases

7QIZ|1|S2|C|25

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_169 not in the Motif Atlas

Geometric match to IL_7ZLQ_001

Geometric discrepancy: 0.1581

The information below is about IL_7ZLQ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7QIZ|1|S2|U|24
7QIZ|1|S2|C|25
7QIZ|1|S2|A|26
7QIZ|1|S2|U|27
*
7QIZ|1|S2|A|602
7QIZ|1|S2|UY1|603
7QIZ|1|S2|A|604

Current chains

Chain S2

18S

Nearby chains

Chain CA

40S body ribosomal protein uS12

Chain GA

40S body ribosomal protein uS4