IL_7QIZ_172

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

U(OMC)AAA*UGA(OMC)AA

Length

11 nucleotides

Bulged bases

7QIZ|1|S2|A|472

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_172 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.1399

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7QIZ|1|S2|U|37
7QIZ|1|S2|OMC|38
7QIZ|1|S2|A|39
7QIZ|1|S2|A|40
7QIZ|1|S2|A|41
*
7QIZ|1|S2|U|470
7QIZ|1|S2|G|471
7QIZ|1|S2|A|472
7QIZ|1|S2|OMC|473
7QIZ|1|S2|A|474
7QIZ|1|S2|A|475

Current chains

Chain S2

18S

Nearby chains

Chain GA

40S body ribosomal protein uS4

Chain KA

40S ribosomal protein S24

Chain w

40S ribosomal protein S4