IL_7QIZ_177
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- G(PSU)UAU*A(PSU)UUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_177 not in the Motif Atlas
- Geometric match to IL_4V88_422
- Geometric discrepancy: 0.3969
- The information below is about IL_4V88_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
7QIZ|1|S2|G|110
7QIZ|1|S2|PSU|111
7QIZ|1|S2|U|112
7QIZ|1|S2|A|113
7QIZ|1|S2|U|114
*
7QIZ|1|S2|A|305
7QIZ|1|S2|PSU|306
7QIZ|1|S2|U|307
7QIZ|1|S2|U|308
7QIZ|1|S2|C|309
Current chains
- Chain S2
- 18S
Nearby chains
- Chain w
- 40S ribosomal protein S4
- Chain y
- 40S ribosomal protein S8
- Chain z
- Ribosomal_S17_N domain-containing protein
Coloring options: