IL_7QIZ_179
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UUG(PSU)U(OMU)G*CA(PSU)UCA
- Length
- 13 nucleotides
- Bulged bases
- 7QIZ|1|S2|G|120, 7QIZ|1|S2|U|122
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_179 not in the Motif Atlas
- Homologous match to IL_8C3A_401
- Geometric discrepancy: 0.5631
- The information below is about IL_8C3A_401
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02934.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|S2|U|118
7QIZ|1|S2|U|119
7QIZ|1|S2|G|120
7QIZ|1|S2|PSU|121
7QIZ|1|S2|U|122
7QIZ|1|S2|OMU|123
7QIZ|1|S2|G|124
*
7QIZ|1|S2|C|298
7QIZ|1|S2|A|299
7QIZ|1|S2|PSU|300
7QIZ|1|S2|U|301
7QIZ|1|S2|C|302
7QIZ|1|S2|A|303
Current chains
- Chain S2
- 18S
Nearby chains
- Chain FA
- 40S ribosomal protein S6
- Chain w
- 40S ribosomal protein S4
- Chain y
- 40S ribosomal protein S8
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