IL_7QIZ_180
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 7QIZ|1|S2|U|168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_180 not in the Motif Atlas
- Geometric match to IL_4V88_394
- Geometric discrepancy: 0.0828
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7QIZ|1|S2|G|141
7QIZ|1|S2|G|142
7QIZ|1|S2|A|143
7QIZ|1|S2|U|144
7QIZ|1|S2|A|145
7QIZ|1|S2|A|146
7QIZ|1|S2|C|147
*
7QIZ|1|S2|G|163
7QIZ|1|S2|C|164
7QIZ|1|S2|U|165
7QIZ|1|S2|A|166
7QIZ|1|S2|A|167
7QIZ|1|S2|U|168
7QIZ|1|S2|A|169
7QIZ|1|S2|C|170
Current chains
- Chain S2
- 18S
Nearby chains
- Chain FA
- 40S ribosomal protein S6
- Chain KA
- 40S ribosomal protein S24
Coloring options: