IL_7QIZ_181

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCGU*AG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_181 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.1534

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7QIZ|1|S2|C|147
7QIZ|1|S2|C|148
7QIZ|1|S2|G|149
7QIZ|1|S2|U|150
*
7QIZ|1|S2|A|160
7QIZ|1|S2|G|161
7QIZ|1|S2|A2M|162
7QIZ|1|S2|G|163

Current chains

Chain S2

18S

Nearby chains

Chain FA

40S ribosomal protein S6

Chain KA

40S ribosomal protein S24