IL_7QIZ_185

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UA(PSU)U*GA(PSU)A

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_185 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2851

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7QIZ|1|S2|U|206
7QIZ|1|S2|A|207
7QIZ|1|S2|PSU|208
7QIZ|1|S2|U|209
*
7QIZ|1|S2|G|256
7QIZ|1|S2|A|257
7QIZ|1|S2|PSU|258
7QIZ|1|S2|A|259

Current chains

Chain S2

18S

Nearby chains

Chain w

40S ribosomal protein S4

Chain y

40S ribosomal protein S8

Chain z

Ribosomal_S17_N domain-containing protein