IL_7QIZ_187

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_187 not in the Motif Atlas

Geometric match to IL_4V88_400

Geometric discrepancy: 0.2606

The information below is about IL_4V88_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7QIZ|1|S2|C|273
7QIZ|1|S2|A|274
7QIZ|1|S2|C|275
7QIZ|1|S2|G|276
*
7QIZ|1|S2|C|287
7QIZ|1|S2|G|288
7QIZ|1|S2|G|289

Current chains

Chain S2

18S

Nearby chains

Chain FA

40S ribosomal protein S6