IL_7QIZ_190

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAG*CGA(PSU)UC

Length

9 nucleotides

Bulged bases

7QIZ|1|S2|A|382, 7QIZ|1|S2|U|384

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_190 not in the Motif Atlas

Geometric match to IL_4V88_404

Geometric discrepancy: 0.1743

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7QIZ|1|S2|G|367
7QIZ|1|S2|A|368
7QIZ|1|S2|G|369
*
7QIZ|1|S2|C|380
7QIZ|1|S2|G|381
7QIZ|1|S2|A|382
7QIZ|1|S2|PSU|383
7QIZ|1|S2|U|384
7QIZ|1|S2|C|385

Current chains

Chain S2

18S

Nearby chains

Chain CA

40S body ribosomal protein uS12

Chain GA

40S body ribosomal protein uS4

Chain w

40S ribosomal protein S4