IL_7QIZ_198
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_198 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.0697
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
7QIZ|1|S2|A|553
7QIZ|1|S2|G|554
7QIZ|1|S2|G|555
7QIZ|1|S2|G|556
7QIZ|1|S2|C|557
7QIZ|1|S2|A|558
7QIZ|1|S2|A|559
7QIZ|1|S2|G|560
*
7QIZ|1|S2|C|590
7QIZ|1|S2|U|591
Current chains
- Chain S2
- 18S
Nearby chains
- Chain EA
- S5 DRBM domain-containing protein
- Chain GA
- 40S body ribosomal protein uS4
- Chain MA
- 40S ribosomal protein S30
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