IL_7QIZ_202

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_202 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.0926

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7QIZ|1|S2|G|619
7QIZ|1|S2|U|620
7QIZ|1|S2|U|621
7QIZ|1|S2|A2M|622
7QIZ|1|S2|A|623
7QIZ|1|S2|A|624
7QIZ|1|S2|A|625
*
7QIZ|1|S2|U|1107
7QIZ|1|S2|C|1108

Current chains

Chain S2

18S

Nearby chains

Chain CA

40S body ribosomal protein uS12

Chain DA

40S ribosomal protein S26

Chain EA

S5 DRBM domain-containing protein