IL_7QIZ_207

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

U(PSU)U*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_207 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.1795

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QIZ|1|S2|U|752
7QIZ|1|S2|PSU|753
7QIZ|1|S2|U|754
*
7QIZ|1|S2|A|803
7QIZ|1|S2|U|804
7QIZ|1|S2|G|805

Current chains

Chain S2

18S

Nearby chains

Chain JA

40S ribosomal protein S15a-1

Chain w

40S ribosomal protein S4

Chain z

Ribosomal_S17_N domain-containing protein