IL_7QIZ_208
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GAAGAAA(PSU)U*ACAUU(A2M)GC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_208 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.2311
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|S2|G|755
7QIZ|1|S2|A|756
7QIZ|1|S2|A|757
7QIZ|1|S2|G|758
7QIZ|1|S2|A|759
7QIZ|1|S2|A|760
7QIZ|1|S2|A|761
7QIZ|1|S2|PSU|762
7QIZ|1|S2|U|763
*
7QIZ|1|S2|A|795
7QIZ|1|S2|C|796
7QIZ|1|S2|A|797
7QIZ|1|S2|U|798
7QIZ|1|S2|U|799
7QIZ|1|S2|A2M|800
7QIZ|1|S2|G|801
7QIZ|1|S2|C|802
Current chains
- Chain S2
- 18S
Nearby chains
- Chain GA
- 40S body ribosomal protein uS4
- Chain JA
- 40S ribosomal protein S15a-1
- Chain w
- 40S ribosomal protein S4
- Chain z
- Ribosomal_S17_N domain-containing protein
Coloring options: