IL_7QIZ_219
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_219 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.0781
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7QIZ|1|S2|G|1044
7QIZ|1|S2|G|1045
7QIZ|1|S2|A|1046
7QIZ|1|S2|U|1047
*
7QIZ|1|S2|G|1077
7QIZ|1|S2|C|1078
7QIZ|1|S2|A|1079
7QIZ|1|S2|C|1080
Current chains
- Chain S2
- 18S
Nearby chains
- Chain DA
- 40S ribosomal protein S26
- Chain HA
- 30S ribosomal protein S15, chloroplastic
- Chain LA
- 40S ribosomal protein S27
- Chain u
- 40S ribosomal protein SA
- Chain v
- 40S ribosomal protein S3a
Coloring options: