IL_7QIZ_220

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_220 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.1264

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7QIZ|1|S2|A|1054
7QIZ|1|S2|U|1055
7QIZ|1|S2|G|1056
*
7QIZ|1|S2|C|1069
7QIZ|1|S2|U|1070

Current chains

Chain S2

18S

Nearby chains

Chain LA

40S ribosomal protein S27

Chain u

40S ribosomal protein SA

Chain v

40S ribosomal protein S3a