IL_7QIZ_222
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_222 not in the Motif Atlas
- Geometric match to IL_4V88_440
- Geometric discrepancy: 0.1734
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|G|1114
7QIZ|1|S2|G|1115
7QIZ|1|S2|A|1116
7QIZ|1|S2|G|1117
7QIZ|1|S2|U|1118
7QIZ|1|S2|A|1119
7QIZ|1|S2|PSU|1120
7QIZ|1|S2|G|1121
*
7QIZ|1|S2|U|1132
7QIZ|1|S2|G|1133
7QIZ|1|S2|A|1134
7QIZ|1|S2|A|1135
7QIZ|1|S2|A|1136
7QIZ|1|S2|C|1137
Current chains
- Chain S2
- 18S
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain CA
- 40S body ribosomal protein uS12
- Chain t
- 60S ribosomal protein L41
Coloring options: