IL_7QIZ_223

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7QIZ|1|S2|A|1637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_223 not in the Motif Atlas

Geometric match to IL_4LFB_035

Geometric discrepancy: 0.0583

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7QIZ|1|S2|G|1149
7QIZ|1|S2|A|1150
*
7QIZ|1|S2|U|1636
7QIZ|1|S2|A|1637
7QIZ|1|S2|C|1638

Current chains

Chain S2

18S

Nearby chains

Chain DA

40S ribosomal protein S26

Chain EA

S5 DRBM domain-containing protein