IL_7QIZ_226
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CC(PSU)G*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_226 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.2842
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
7QIZ|1|S2|C|1176
7QIZ|1|S2|C|1177
7QIZ|1|S2|PSU|1178
7QIZ|1|S2|G|1179
*
7QIZ|1|S2|C|1468
7QIZ|1|S2|G|1469
7QIZ|1|S2|C|1470
7QIZ|1|S2|G|1471
Current chains
- Chain S2
- 18S
Nearby chains
- Chain QA
- 40S ribosomal protein uS19
- Chain RA
- 40S ribosomal protein uS9
- Chain TA
- 40S ribosomal protein uS13
- Chain UA
- 40S ribosomal protein eS19
- Chain aA
- tRNA_1
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