IL_7QIZ_229

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UAG*C(OMU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_229 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1791

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7QIZ|1|S2|U|1225
7QIZ|1|S2|A|1226
7QIZ|1|S2|G|1227
*
7QIZ|1|S2|C|1262
7QIZ|1|S2|OMU|1263
7QIZ|1|S2|A|1264

Current chains

Chain S2

18S

Nearby chains

Chain PA

S10_plectin domain-containing protein