IL_7QIZ_231
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 7QIZ|1|S2|C|1277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_231 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.1042
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|U|1275
7QIZ|1|S2|G|1276
7QIZ|1|S2|C|1277
7QIZ|1|S2|A|1278
7QIZ|1|S2|U|1279
*
7QIZ|1|S2|A|1441
7QIZ|1|S2|U|1442
7QIZ|1|S2|G|1443
Current chains
- Chain S2
- 18S
Nearby chains
- Chain NA
- KH type-2 domain-containing protein
- Chain PA
- S10_plectin domain-containing protein
- Chain VA
- Ribosomal_S10 domain-containing protein
- Chain XA
- 40S ribosomal protein uS14
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