IL_7QIZ_237

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

7QIZ|1|S2|C|1349, 7QIZ|1|S2|U|1350

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_237 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1089

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7QIZ|1|S2|A|1348
7QIZ|1|S2|C|1349
7QIZ|1|S2|U|1350
7QIZ|1|S2|A|1351
*
7QIZ|1|S2|U|1382
7QIZ|1|S2|OMU|1383
7QIZ|1|S2|C|1384
7QIZ|1|S2|U|1385

Current chains

Chain S2

18S

Nearby chains

Chain NA

KH type-2 domain-containing protein

Chain RA

40S ribosomal protein uS9

Chain VA

Ribosomal_S10 domain-containing protein