IL_7QIZ_248

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_248 not in the Motif Atlas

Geometric match to IL_5Z1I_003

Geometric discrepancy: 0.2966

The information below is about IL_5Z1I_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7QIZ|1|S2|C|1650
7QIZ|1|S2|G|1651
7QIZ|1|S2|C|1652
*
7QIZ|1|S2|G|1762
7QIZ|1|S2|A|1763
7QIZ|1|S2|A|1764
7QIZ|1|S2|G|1765

Current chains

Chain S2

18S

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain CA

40S body ribosomal protein uS12

Chain t

60S ribosomal protein L41