IL_7QIZ_253
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGAA*UGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_253 not in the Motif Atlas
- Geometric match to IL_4V88_471
- Geometric discrepancy: 0.105
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7QIZ|1|S2|U|1675
7QIZ|1|S2|G|1676
7QIZ|1|S2|A|1677
7QIZ|1|S2|A|1678
*
7QIZ|1|S2|U|1737
7QIZ|1|S2|G|1738
7QIZ|1|S2|A|1739
7QIZ|1|S2|A|1740
Current chains
- Chain S2
- 18S
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain FA
- 40S ribosomal protein S6
- Chain Y
- TRASH domain-containing protein
- Chain y
- 40S ribosomal protein S8
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