IL_7QIZ_261
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGU(A2M)GC
- Length
- 13 nucleotides
- Bulged bases
- 7QIZ|1|2|A|943, 7QIZ|1|2|G|947
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_261 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0685
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
7QIZ|1|2|OMG|815
7QIZ|1|2|A|816
7QIZ|1|2|A2M|817
7QIZ|1|2|A|818
7QIZ|1|2|G|819
*
7QIZ|1|2|C|941
7QIZ|1|2|U|942
7QIZ|1|2|A|943
7QIZ|1|2|G|944
7QIZ|1|2|U|945
7QIZ|1|2|A2M|946
7QIZ|1|2|G|947
7QIZ|1|2|C|948
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain F
- Ribos_L4_asso_C domain-containing protein
- Chain N
- 60S ribosomal protein L13
- Chain P
- Ribosomal protein L15
- Chain c
- Ribosomal_L18e/L15P domain-containing protein
- Chain l
- Ribosomal protein L37
Coloring options: