IL_7QIZ_267

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

(PSU)UAAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7QIZ|1|2|A|1233

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_267 not in the Motif Atlas

Homologous match to IL_8P9A_282

Geometric discrepancy: 0.2885

The information below is about IL_8P9A_282

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7QIZ|1|2|PSU|1230
7QIZ|1|2|U|1231
7QIZ|1|2|A|1232
7QIZ|1|2|A|1233
7QIZ|1|2|G|1234
7QIZ|1|2|A|1235
7QIZ|1|2|C|1236
7QIZ|1|2|A|1237
7QIZ|1|2|G|1238
*
7QIZ|1|2|C|1295
7QIZ|1|2|C|1296
7QIZ|1|2|G|1297
7QIZ|1|2|A|1298
7QIZ|1|2|A|1299

Current chains

Chain 2

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L18a

Chain o

Ubiquitin