IL_7QIZ_268

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_268 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0762

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7QIZ|1|2|G|1455
7QIZ|1|2|U|1456
7QIZ|1|2|A|1457
7QIZ|1|2|G|1458
7QIZ|1|2|U|1459
7QIZ|1|2|A2M|1460
7QIZ|1|2|OMG|1461
*
7QIZ|1|2|C|2357
7QIZ|1|2|G|2358
7QIZ|1|2|A|2359
7QIZ|1|2|A|2360
7QIZ|1|2|A|2361
7QIZ|1|2|C|2362

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain F

Ribos_L4_asso_C domain-containing protein

Chain R

50S ribosomal protein L22, chloroplastic