IL_7QIZ_273

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

(PSU)CAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_273 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.1812

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7QIZ|1|2|PSU|2214
7QIZ|1|2|C|2215
7QIZ|1|2|A|2216
7QIZ|1|2|A|2217
7QIZ|1|2|A|2218
7QIZ|1|2|G|2219
7QIZ|1|2|U|2220
*
7QIZ|1|2|A|2231
7QIZ|1|2|A|2232
7QIZ|1|2|C|2233
7QIZ|1|2|C|2234
7QIZ|1|2|A|2235
7QIZ|1|2|A|2236
7QIZ|1|2|G|2237

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain k

60S ribosomal protein L36

Chain p

60S ribosomal protein eL42