IL_7QIZ_274

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

7QIZ|1|2|A2M|2284, 7QIZ|1|2|C|2290, 7QIZ|1|2|C|2309

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_274 not in the Motif Atlas

Homologous match to IL_8P9A_318

Geometric discrepancy: 0.0951

The information below is about IL_8P9A_318

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

7QIZ|1|2|C|2280
7QIZ|1|2|5MC|2281
7QIZ|1|2|A|2282
7QIZ|1|2|A|2283
7QIZ|1|2|A2M|2284
7QIZ|1|2|U|2285
7QIZ|1|2|G|2286
7QIZ|1|2|C|2287
7QIZ|1|2|C|2288
7QIZ|1|2|U|2289
7QIZ|1|2|C|2290
7QIZ|1|2|OMG|2291
*
7QIZ|1|2|C|2307
7QIZ|1|2|G|2308
7QIZ|1|2|C|2309
7QIZ|1|2|G|2310

Current chains

Chain 2

25S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain t

60S ribosomal protein L41