IL_7QIZ_282

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

7QIZ|1|2|G|2949, 7QIZ|1|2|A2M|2950

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_282 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.3587

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7QIZ|1|2|OMC|2883
7QIZ|1|2|PSU|2884
7QIZ|1|2|C|2885
*
7QIZ|1|2|G|2947
7QIZ|1|2|PSU|2948
7QIZ|1|2|G|2949
7QIZ|1|2|A2M|2950
7QIZ|1|2|G|2951

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain X

60S ribosomal protein uL14