IL_7QIZ_285

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

G(PSU)UA*(PSU)UUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_285 not in the Motif Atlas

Homologous match to IL_8C3A_399

Geometric discrepancy: 0.4038

The information below is about IL_8C3A_399

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

7QIZ|1|S2|G|110
7QIZ|1|S2|PSU|111
7QIZ|1|S2|U|112
7QIZ|1|S2|A|113
*
7QIZ|1|S2|PSU|306
7QIZ|1|S2|U|307
7QIZ|1|S2|U|308
7QIZ|1|S2|C|309

Current chains

Chain S2

18S

Nearby chains

Chain w

40S ribosomal protein S4

Chain y

40S ribosomal protein S8

Chain z

Ribosomal_S17_N domain-containing protein