IL_7QIZ_292

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

7QIZ|1|S2|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_292 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1339

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7QIZ|1|S2|G|898
7QIZ|1|S2|U|899
7QIZ|1|S2|C|900
7QIZ|1|S2|A|901
7QIZ|1|S2|G|902
*
7QIZ|1|S2|C|913
7QIZ|1|S2|U|914
7QIZ|1|S2|U|915
7QIZ|1|S2|G|916
7QIZ|1|S2|G|917
7QIZ|1|S2|A|918
7QIZ|1|S2|U|919
7QIZ|1|S2|U|920

Current chains

Chain S2

18S

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain IA

Ribosomal protein S14

Chain v

40S ribosomal protein S3a