IL_7QIZ_299

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_299 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.3476

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

7QIZ|1|S2|PSU|1293
7QIZ|1|S2|G|1294
7QIZ|1|S2|G|1295
*
7QIZ|1|S2|C|1326
7QIZ|1|S2|G|1327
7QIZ|1|S2|A|1328

Current chains

Chain S2

18S

Nearby chains

Chain AA

40S ribosomal protein S17

Chain EA

S5 DRBM domain-containing protein

Chain NA

KH type-2 domain-containing protein

Chain u

40S ribosomal protein SA