IL_7QIZ_304

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GCCU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_304 not in the Motif Atlas

Geometric match to IL_8C3A_430

Geometric discrepancy: 0.2986

The information below is about IL_8C3A_430

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

7QIZ|1|2|G|1025
7QIZ|1|2|C|1026
7QIZ|1|2|C|1027
7QIZ|1|2|U|1028
*
7QIZ|1|2|A|1048
7QIZ|1|2|C|1049

Current chains

Chain 2

25S rRNA

Nearby chains

Chain G

Ribosomal_L18_c domain-containing protein