IL_7QP6_005

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

7QP6|1|A|U|44, 7QP6|1|A|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_005 not in the Motif Atlas

Geometric match to IL_4V88_387

Geometric discrepancy: 0.0867

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7QP6|1|A|G|41
7QP6|1|A|A|42
7QP6|1|A|U|43
7QP6|1|A|U|44
7QP6|1|A|A|45
7QP6|1|A|A|46
7QP6|1|A|G|47
*
7QP6|1|A|C|479
7QP6|1|A|G|480
7QP6|1|A|C|481

Current chains

Chain A

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S23