3D structure

PDB id
7QP6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the human 48S initiation complex in open state (h48S AUG open)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
UCCA*UUAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QP6_031 not in the Motif Atlas
Geometric match to IL_6JDV_001
Geometric discrepancy: 0.2848
The information below is about IL_6JDV_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_71194.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
29

Unit IDs

7QP6|1|A|U|566
7QP6|1|A|C|567
7QP6|1|A|C|568
7QP6|1|A|A|569
*
7QP6|1|A|U|581
7QP6|1|A|U|582
7QP6|1|A|A|583
7QP6|1|A|A|584

Current chains

Chain A
18S rRNA

Nearby chains

Chain D
40S ribosomal protein S9
Chain T
40S ribosomal protein S24

Coloring options:


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