IL_7QP6_050

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7QP6|1|A|G|970

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_050 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1571

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7QP6|1|A|G|952
7QP6|1|A|C|953
7QP6|1|A|U|954
7QP6|1|A|A|955
7QP6|1|A|G|956
*
7QP6|1|A|C|967
7QP6|1|A|U|968
7QP6|1|A|U|969
7QP6|1|A|G|970
7QP6|1|A|G|971
7QP6|1|A|A|972
7QP6|1|A|C|973
7QP6|1|A|C|974

Current chains

Chain A

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S3a

Chain P

40S ribosomal protein S14