IL_7QP6_081

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7QP6|1|A|C|1701, 7QP6|1|A|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_081 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1348

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7QP6|1|A|C|1700
7QP6|1|A|C|1701
7QP6|1|A|G|1702
*
7QP6|1|A|C|1833
7QP6|1|A|A|1834
7QP6|1|A|A|1835
7QP6|1|A|G|1836

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain Q

40S ribosomal protein S26

Chain w

Transfer RNA; tRNA