IL_7QP6_082

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

G(OMC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_082 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1454

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7QP6|1|A|G|1702
7QP6|1|A|OMC|1703
7QP6|1|A|C|1704
7QP6|1|A|C|1705
*
7QP6|1|A|G|1829
7QP6|1|A|UR3|1830
7QP6|1|A|A|1831
7QP6|1|A|A|1832
7QP6|1|A|C|1833

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain 9

60S ribosomal protein L41

Chain p

Eukaryotic translation initiation factor 1