IL_7QP6_089

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_089 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.1124

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7QP6|1|A|U|1733
7QP6|1|A|G|1734
7QP6|1|A|A|1735
7QP6|1|A|G|1736
*
7QP6|1|A|C|1798
7QP6|1|A|G|1799
7QP6|1|A|A|1800
7QP6|1|A|A|1801

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S8

Chain S

40S ribosomal protein S6