IL_7QP6_091

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_091 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1292

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7QP6|1|A|C|1742
7QP6|1|A|G|1743
7QP6|1|A|G|1744
7QP6|1|A|A|1745
7QP6|1|A|U|1746
*
7QP6|1|A|A|1788
7QP6|1|A|G|1789
7QP6|1|A|A|1790
7QP6|1|A|A|1791
7QP6|1|A|G|1792

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S8

Chain S

40S ribosomal protein S6