IL_7QTT_003
3D structure
- PDB id
- 7QTT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural organization of a late activated human spliceosome (Baqr, core region)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCC*GAC
- Length
- 7 nucleotides
- Bulged bases
- 7QTT|1|d|C|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QTT_003 not in the Motif Atlas
- Geometric match to IL_3TD0_002
- Geometric discrepancy: 0.0831
- The information below is about IL_3TD0_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
7QTT|1|d|G|58
7QTT|1|d|G|59
7QTT|1|d|C|60
7QTT|1|d|C|61
*
7QTT|1|d|G|75
7QTT|1|d|A|76
7QTT|1|d|C|77
Current chains
- Chain d
- U6snRNA
Nearby chains
- Chain I
- Splicing factor 3A subunit 2
- Chain O
- Pleiotropic regulator 1
- Chain P
- Cell division cycle 5-like protein
- Chain U
- Pre-mRNA-splicing factor RBM22
- Chain X
- Crooked neck-like protein 1
- Chain Y
- SNW domain-containing protein 1
- Chain a
- Pre-mRNA-processing-splicing factor 8
- Chain g
- MINX
Coloring options: