IL_7QVP_007
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CG*CCGG
- Length
- 6 nucleotides
- Bulged bases
- 7QVP|1|L6|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_007 not in the Motif Atlas
- Geometric match to IL_7RQB_073
- Geometric discrepancy: 0.2598
- The information below is about IL_7RQB_073
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_88739.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
7QVP|1|L1|C|32
7QVP|1|L1|G|33
*
7QVP|1|L6|C|339
7QVP|1|L6|C|340
7QVP|1|L6|G|341
7QVP|1|L6|G|342
Current chains
- Chain L1
- 5.8S ribosomal RNA
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain MC
- 60S ribosomal protein L4
- Chain ML
- 60S ribosomal protein L13
- Chain MN
- 60S ribosomal protein L15
- Chain Mj
- Ribosomal protein L37
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