IL_7QVP_011

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

7QVP|1|L1|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_011 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.2186

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

7QVP|1|L1|G|149
7QVP|1|L1|C|150
7QVP|1|L1|G|151
*
7QVP|1|L6|C|6
7QVP|1|L6|C|7

Current chains

Chain L1

5.8S ribosomal RNA

Chain L6

28S ribosomal RNA

Nearby chains

Chain MG

60S ribosomal protein L7a

Chain MN

60S ribosomal protein L15

Chain MX

60S ribosomal protein L23a