IL_7QVP_020

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGCU*GGCG

Length

9 nucleotides

Bulged bases

7QVP|1|L5|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_020 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3568

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7QVP|1|L5|C|180
7QVP|1|L5|C|181
7QVP|1|L5|G|182
7QVP|1|L5|C|183
7QVP|1|L5|U|184
*
7QVP|1|L5|G|253
7QVP|1|L5|G|254
7QVP|1|L5|C|255
7QVP|1|L5|G|256

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35