IL_7QVP_021

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCGUGG*CG

Length

8 nucleotides

Bulged bases

7QVP|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_021 not in the Motif Atlas

Geometric match to IL_7Q82_001

Geometric discrepancy: 0.1893

The information below is about IL_7Q82_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7QVP|1|L5|U|184
7QVP|1|L5|C|185
7QVP|1|L5|G|186
7QVP|1|L5|U|187
7QVP|1|L5|G|188
7QVP|1|L5|G|189
*
7QVP|1|L5|C|252
7QVP|1|L5|G|253

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain Lj

Ribosomal protein L37