IL_7QVP_046

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

7QVP|1|L5|C|1214, 7QVP|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_046 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.3365

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

7QVP|1|L5|C|1082
7QVP|1|L5|U|1083
7QVP|1|L5|C|1084
*
7QVP|1|L5|G|1213
7QVP|1|L5|C|1214
7QVP|1|L5|C|1215
7QVP|1|L5|C|1216
7QVP|1|L5|G|1217

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7