IL_7QVP_086

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

7QVP|1|L5|C|1935, 7QVP|1|L5|A|2041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_086 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1603

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7QVP|1|L5|G|1933
7QVP|1|L5|A|1934
7QVP|1|L5|C|1935
7QVP|1|L5|C|1936
7QVP|1|L5|C|1937
7QVP|1|L5|C|1938
7QVP|1|L5|A|1939
7QVP|1|L5|G|1940
7QVP|1|L5|A|1941
7QVP|1|L5|A|1942
7QVP|1|L5|A|1943
7QVP|1|L5|A|1944
*
7QVP|1|L5|U|2038
7QVP|1|L5|G|2039
7QVP|1|L5|A|2040
7QVP|1|L5|A|2041
7QVP|1|L5|A|2042
7QVP|1|L5|A|2043
7QVP|1|L5|U|2044
7QVP|1|L5|G|2045
7QVP|1|L5|G|2046
7QVP|1|L5|A|2047
7QVP|1|L5|U|2048
7QVP|1|L5|G|2049
7QVP|1|L5|G|2050
7QVP|1|L5|C|2051
7QVP|1|L5|G|2052
7QVP|1|L5|C|2053

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10-like

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a

Chain Lm

Ubiquitin-60S ribosomal protein L40